{"text_format":"1","workbook":"xlsx","n_sheets":22,"sheets":["Main","Measured Plaques","Slides","Block Calculations","Group Calculations","Pivots1","Pivots2","Visualize Slide","Analyze Data","Export Data","ForTransposedCopy","Analyze Animal Table","PSL Group 1","PSL Group 2","PSL Group 3","PSL Group 4","PSL Group 5","RP Group 1","RP Group 2","RP Group 3","RP Group 4","RP Group 5"],"not_rendered":{"charts":24,"images":0,"macros":1,"external_links":0,"defined_names":45,"comments":1,"pivot_tables":21},"unopened":[],"bounds":{"document_bytes":16777216,"sheet_cells":100000,"rows_first":2000,"rows_last":500,"rows_between":2000,"halvings":0,"cell_chars":16384,"cell_head_chars":4096},"cells_cut":0,"cells_raw":0,"read":"whole","date_system":"1900"}

{"sheet":"Main","index":0,"n_rows":36,"n_cols":11,"rows_kept":36,"cut":false,"hidden":false,"merged":[[34,6,36,7],[31,0,31,1],[0,4,0,7],[10,6,13,7],[2,6,3,7],[14,6,15,7],[22,6,27,7],[14,0,14,1],[16,0,16,1],[20,0,20,1],[6,1,8,1],[28,6,29,7]]}
["How to use this tool:",null,null,null,"Change this to your needs",null,null,null,null,null,"Do not change"]
["Enter the desired root folder path (make sure it ends with a \"\\\"):","C:\\",null,null,null,null,null,null,null,null,"Side"]
["Enter your shortcut/name:",null,null,null,"Group name",null,"Distance category Reference point [RP]",null,null,null,"left"]
[null,null,null,null,"1st group",null,null,null,null,null,"right"]
["Save the file and create the \"Import\" folder:",null,null,null,"2nd group",null,"Group","max distance"]
[null,null,null,null,null,null,1,500,null,null,"current folder path:"]
["Original file saved under:",null,null,null,null,null,2,1000,null,null,{"$f":"LEFT(CELL(\"filename\",$A$1),FIND(\"[\",CELL(\"filename\",$A$1),1)-1)","v":"R:\\NRL\\_Analyze\\Abeta Pump Animals\\"}]
[null,null,null,null,null,null,3,1500]
[null,null,null,null,null,null,4,2000]
[null,null,null,null,null,null,5,{"$f":"\"over \" & H9","v":"over 2000"}]
["Put all of the files you want to analyze into the following folder:",null,null,null,null,null,"You can change the max distance between the plaque and the corresponding injection/control point"]
[]
["Click the \"Import data\" - button"]
[]
["add/define group names (you can add a group by writing it under the last cell)",null,null,null,null,null,"Distance category parallel straight-line [PSL]"]
[]
["Assign the slides to there group and choose the ipsilateral side",null,null,null,null,null,"Group","max distance"]
[null,null,null,null,null,null,1,200]
["Click the \"Calculate\" button to update data on the other sheets:",null,null,null,null,null,2,400]
[null,null,null,null,null,null,3,800]
["Check the following table for errors and correct them",null,null,null,null,null,4,1000]
["Number of imported plaques:",{"$f":"COUNTA(ImportMeasuredPoints[SlideID])","v":0},null,null,null,null,5,{"$f":"\"over \" & H21","v":"over 1000"}]
["Number of imported slides:",{"$f":"COUNTA(ImportAnimalIDs[SlideID])","v":0},null,null,null,null,"You can change the max distance between the plaque and the parallel straight-line which goes through the corresponding reference points"]
["Number of imported blocks:",{"$f":"COUNTA(BlockIDs[BlockID])","v":0}]
["Number of slides missing plaque data:",{"$f":"IFERROR(COUNTA(ImportAnimalIDs[SlideID])-SUM(IF(FREQUENCY(IF(LEN(ImportMeasuredPoints[SlideID])>0,MATCH(ImportMeasuredPoints[SlideID],ImportMeasuredPoints[SlideID],0),\"\"),IF(LEN(ImportMeasuredPoints[SlideID])>0,MATCH(ImportMeasuredPoints[SlideID],ImportMeasuredPoints[SlideID],0),\"\"))>0,1)),0)","v":0}]
["Blank cells on 'Measured Plaques' sheet:",{"$f":"COUNTBLANK(ImportMeasuredPoints[[X'[P']]:[Side Title'[P']]])","v":11}]
["Blank cells on 'Slides' sheet:",{"$f":"COUNTBLANK(ImportAnimalIDs[[X'[H1']]:[Side'[I2']]])","v":18}]
["Slides w/o assigned group:",{"$f":"COUNTBLANK(ImportAnimalIDs[Group])","v":1}]
["Slides w/o assigned ipsilateral side:",{"$f":"COUNTBLANK(ImportAnimalIDs[Ipsilateral side])","v":1},null,null,null,null,"Plaque size categories"]
[]
[null,null,null,null,null,null,"Group","max size"]
[{"$f":"IFERROR(IF(SUM(B25:B29)=0,\"No error found\",\"Error, please check all tables for missing values. Maybe reanalyze affected slides!\"),\"Error, please check all tables for missing values. Maybe reanalyze affected slides!\")","v":"Error, please check all tables for missing values. Maybe reanalyze affected slides!"},null,null,null,null,null,"small",400]
[null,null,null,null,null,null,"medium",700]
[null,null,null,null,null,null,"large",{"$f":"\"> \"&H33","v":"> 700"}]
[null,null,null,null,null,null,"You can set values here to group plaques with a certain size together"]
["To reimport and refresh all data use this button:"]

{"sheet":"Measured Plaques","index":1,"n_rows":1,"n_cols":19,"rows_kept":1,"cut":false,"hidden":false,"merged":[]}
["SlideID","BlockID","SlideNo","RegionID","Area filled","Area filled convex","Grayscale Std Dev","X[P]","Y[P]","X[HSL]","DeltaX","Side[P]","d[RP]","Distance Group [RP]","d[PSL]","Distance Group [PSL]","Plaque Coverage Percent","Side Title[P]","Object size group"]

{"sheet":"Slides","index":2,"n_rows":1,"n_cols":184,"rows_kept":1,"cut":false,"hidden":false,"merged":[]}
["SlideID","BlockID","SlideNo","Area","Ipsilateral side","Group","info","X[H1]","Y[H1]","X[H2]","Y[H2]","X[I1]","Y[I1]","X[I2]","Y[I2]","m[HSL]","b[HSL]","X[SL(I1)]","DeltaX[SL(I1)]","b[SL(I1)]","Side[I1]","X[SL(I2)]","DeltaX[SL(I2)]","b[SL(I2)]","Side[I2]","Plaque count","Plaque count [ipsi]","Plaque count [contra]","Plaque count [ipsi] Group 1 [RP]","Plaque count [ipsi] Group 2 [RP]","Plaque count [ipsi] Group 3 [RP]","Plaque count [ipsi] Group 4 [RP]","Plaque count [ipsi] Group 5 [RP]","Plaque count [contra] Group 1 [RP]","Plaque count [contra] Group 2 [RP]","Plaque count [contra] Group 3 [RP]","Plaque count [contra] Group 4 [RP]","Plaque count [contra] Group 5 [RP]","Plaque count [ipsi] Group 1 [PSL]","Plaque count [ipsi] Group 2 [PSL]","Plaque count [ipsi] Group 3 [PSL]","Plaque count [ipsi] Group 4 [PSL]","Plaque count [ipsi] Group 5 [PSL]","Plaque count [contra] Group 1 [PSL]","Plaque count [contra] Group 2 [PSL]","Plaque count [contra] Group 3 [PSL]","Plaque count [contra] Group 4 [PSL]","Plaque count [contra] Group 5 [PSL]","Average Plaque size","Average Plaque size [ipsi]","Average Plaque size [contra]","Average Plaque size [ipsi] Group 1 [RP]","Average Plaque size [ipsi] Group 2 [RP]","Average Plaque size [ipsi] Group 3 [RP]","Average Plaque size [ipsi] Group 4 [RP]","Average Plaque size [ipsi] Group 5 [RP]","Average Plaque size [contra] Group 1 [RP]","Average Plaque size [contra] Group 2 [RP]","Average Plaque size [contra] Group 3 [RP]","Average Plaque size [contra] Group 4 [RP]","Average Plaque size [contra] Group 5 [RP]","Average Plaque size [ipsi] Group 1 [PSL]","Average Plaque size [ipsi] Group 2 [PSL]","Average Plaque size [ipsi] Group 3 [PSL]","Average Plaque size [ipsi] Group 4 [PSL]","Average Plaque size [ipsi] Group 5 [PSL]","Average Plaque size [contra] Group 1 [PSL]","Average Plaque size [contra] Group 2 [PSL]","Average Plaque size [contra] Group 3 [PSL]","Average Plaque size [contra] Group 4 [PSL]","Average Plaque size [contra] Group 5 [PSL]","Average distance from RP","Average distance from RP Group 1 [ipsi]","Average distance from RP Group 2 [ipsi]","Average distance from RP Group 3 [ipsi]","Average distance from RP Group 4 [ipsi]","Average distance from RP Group 5 [ipsi]","Average distance from RP Group 1 [contra]","Average distance from RP Group 2 [contra]","Average distance from RP Group 3 [contra]","Average distance from RP Group 4 [contra]","Average distance from RP Group 5 [contra]","Average distance from PSL","Average distance from PSL Group 1 [ipsi]","Average distance from PSL Group 2 [ipsi]","Average distance from PSL Group 3 [ipsi]","Average distance from PSL Group 4 [ipsi]","Average distance from PSL Group 5 [ipsi]","Average distance from PSL Group 1 [contra]","Average distance from PSL Group 2 [contra]","Average distance from PSL Group 3 [contra]","Average distance from PSL Group 4 [contra]","Average distance from PSL Group 5 [contra]","Plaque count size small","Plaque count size medium","Plaque count size large","Plaque count size small [ipsi]","Plaque count size medium [ipsi]","Plaque count size large [ipsi]","Plaque count size small [contra]","Plaque count size medium [contra]","Plaque count size large [contra]","Plaque count size small [ipsi] Group 1 [RP]","Plaque count size small [ipsi] Group 2 [RP]","Plaque count size small [ipsi] Group 3 [RP]","Plaque count size small [ipsi] Group 4 [RP]","Plaque count size small [ipsi] Group 5 [RP]","Plaque count size medium [ipsi] Group 1 [RP]","Plaque count size medium [ipsi] Group 2 [RP]","Plaque count size medium [ipsi] Group 3 [RP]","Plaque count size medium [ipsi] Group 4 [RP]","Plaque count size medium [ipsi] Group 5 [RP]","Plaque count size large [ipsi] Group 1 [RP]","Plaque count size large [ipsi] Group 2 [RP]","Plaque count size large [ipsi] Group 3 [RP]","Plaque count size large [ipsi] Group 4 [RP]","Plaque count size large [ipsi] Group 5 [RP]","Plaque count size small [contra] Group 1 [RP]","Plaque count size small [contra] Group 2 [RP]","Plaque count size small [contra] Group 3 [RP]","Plaque count size small [contra] Group 4 [RP]","Plaque count size small [contra] Group 5 [RP]","Plaque count size medium [contra] Group 1 [RP]","Plaque count size medium [contra] Group 2 [RP]","Plaque count size medium [contra] Group 3 [RP]","Plaque count size medium [contra] Group 4 [RP]","Plaque count size medium [contra] Group 5 [RP]","Plaque count size large [contra] Group 1 [RP]","Plaque count size large [contra] Group 2 [RP]","Plaque count size large [contra] Group 3 [RP]","Plaque count size large [contra] Group 4 [RP]","Plaque count size large [contra] Group 5 [RP]","Plaque count size small [ipsi] Group 1 [PSL]","Plaque count size small [ipsi] Group 2 [PSL]","Plaque count size small [ipsi] Group 3 [PSL]","Plaque count size small [ipsi] Group 4 [PSL]","Plaque count size small [ipsi] Group 5 [PSL]","Plaque count size medium [ipsi] Group 1 [PSL]","Plaque count size medium [ipsi] Group 2 [PSL]","Plaque count size medium [ipsi] Group 3 [PSL]","Plaque count size medium [ipsi] Group 4 [PSL]","Plaque count size medium [ipsi] Group 5 [PSL]","Plaque count size large [ipsi] Group 1 [PSL]","Plaque count size large [ipsi] Group 2 [PSL]","Plaque count size large [ipsi] Group 3 [PSL]","Plaque count size large [ipsi] Group 4 [PSL]","Plaque count size large [ipsi] Group 5 [PSL]","Plaque count size small [contra] Group 1 [PSL]","Plaque count size small [contra] Group 2 [PSL]","Plaque count size small [contra] Group 3 [PSL]","Plaque count size small [contra] Group 4 [PSL]","Plaque count size small [contra] Group 5 [PSL]","Plaque count size medium [contra] Group 1 [PSL]","Plaque count size medium [contra] Group 2 [PSL]","Plaque count size medium [contra] Group 3 [PSL]","Plaque count size medium [contra] Group 4 [PSL]","Plaque count size medium [contra] Group 5 [PSL]","Plaque count size large [contra] Group 1 [PSL]","Plaque count size large [contra] Group 2 [PSL]","Plaque count size large [contra] Group 3 [PSL]","Plaque count size large [contra] Group 4 [PSL]","Plaque count size large [contra] Group 5 [PSL]","Plaque coverage [ipsi]","Plaque coverage [contra]","Plaque coverage [ipsi] Group 1 [RP]","Plaque coverage [ipsi] Group 2 [RP]","Plaque coverage [ipsi] Group 3 [RP]","Plaque coverage [ipsi] Group 4 [RP]","Plaque coverage [ipsi] Group 5 [RP]","Plaque coverage [contra] Group 1 [RP]","Plaque coverage [contra] Group 2 [RP]","Plaque coverage [contra] Group 3 [RP]","Plaque coverage [contra] Group 4 [RP]","Plaque coverage [contra] Group 5 [RP]","Plaque coverage [ipsi] Group 1 [PSL]","Plaque coverage [ipsi] Group 2 [PSL]","Plaque coverage [ipsi] Group 3 [PSL]","Plaque coverage [ipsi] Group 4 [PSL]","Plaque coverage [ipsi] Group 5 [PSL]","Plaque coverage [contra] Group 1 [PSL]","Plaque coverage [contra] Group 2 [PSL]","Plaque coverage [contra] Group 3 [PSL]","Plaque coverage [contra] Group 4 [PSL]","Plaque coverage [contra] Group 5 [PSL]"]

{"sheet":"Block Calculations","index":3,"n_rows":1,"n_cols":186,"rows_kept":1,"cut":false,"hidden":false,"merged":[]}
["BlockID","Group","Slide count","Plaque count","Average plaque count","Plaque count [ipsi]","Average plaque count [ipsi]","Plaque count [contra]","Average plaque count [contra]","Plaque count [ipsi] Group 1 [RP]","Average plaque count [ipsi] Group 1 [RP]","Plaque count [ipsi] Group 2 [RP]","Average plaque count [ipsi] Group 2 [RP]","Plaque count [ipsi] Group 3 [RP]","Average plaque count [ipsi] Group 3 [RP]","Plaque count [ipsi] Group 4 [RP]","Average plaque count [ipsi] Group 4 [RP]","Plaque count [ipsi] Group 5 [RP]","Average plaque count [ipsi] Group 5 [RP]","Plaque count [contra] Group 1 [RP]","Average plaque count [contra] Group 1 [RP]","Plaque count [contra] Group 2 [RP]","Average plaque count [contra] Group 2 [RP]","Plaque count [contra] Group 3 [RP]","Average plaque count [contra] Group 3 [RP]","Plaque count [contra] Group 4 [RP]","Average plaque count [contra] Group 4 [RP]","Plaque count [contra] Group 5 [RP]","Average plaque count [contra] Group 5 [RP]","Plaque count [ipsi] Group 1 [PSL]","Average plaque count [ipsi] Group 1 [PSL]","Plaque count [ipsi] Group 2 [PSL]","Average plaque count [ipsi] Group 2 [PSL]","Plaque count [ipsi] Group 3 [PSL]","Average plaque count [ipsi] Group 3 [PSL]","Plaque count [ipsi] Group 4 [PSL]","Average plaque count [ipsi] Group 4 [PSL]","Plaque count [ipsi] Group 5 [PSL]","Average plaque count [ipsi] Group 5 [PSL]","Plaque count [contra] Group 1 [PSL]","Average plaque count [contra] Group 1 [PSL]","Plaque count [contra] Group 2 [PSL]","Average plaque count [contra] Group 2 [PSL]","Plaque count [contra] Group 3 [PSL]","Average plaque count [contra] Group 3 [PSL]","Plaque count [contra] Group 4 [PSL]","Average plaque count [contra] Group 4 [PSL]","Plaque count [contra] Group 5 [PSL]","Average plaque count [contra] Group 5 [PSL]","Average Plaque size","Average Plaque size [ipsi]","Average Plaque size [contra]","Average Plaque size [ipsi] Group 1 [RP]","Average Plaque size [ipsi] Group 2 [RP]","Average Plaque size [ipsi] Group 3 [RP]","Average Plaque size [ipsi] Group 4 [RP]","Average Plaque size [ipsi] Group 5 [RP]","Average Plaque size [contra] Group 1 [RP]","Average Plaque size [contra] Group 2 [RP]","Average Plaque size [contra] Group 3 [RP]","Average Plaque size [contra] Group 4 [RP]","Average Plaque size [contra] Group 5 [RP]","Average Plaque size [ipsi] Group 1 [PSL]","Average Plaque size [ipsi] Group 2 [PSL]","Average Plaque size [ipsi] Group 3 [PSL]","Average Plaque size [ipsi] Group 4 [PSL]","Average Plaque size [ipsi] Group 5 [PSL]","Average Plaque size [contra] Group 1 [PSL]","Average Plaque size [contra] Group 2 [PSL]","Average Plaque size [contra] Group 3 [PSL]","Average Plaque size [contra] Group 4 [PSL]","Average Plaque size [contra] Group 5 [PSL]","Average distance from RP","Average distance from RP Group 1 [ipsi]","Average distance from RP Group 2 [ipsi]","Average distance from RP Group 3 [ipsi]","Average distance from RP Group 4 [ipsi]","Average distance from RP Group 5 [ipsi]","Average distance from RP Group 1 [contra]","Average distance from RP Group 2 [contra]","Average distance from RP Group 3 [contra]","Average distance from RP Group 4 [contra]","Average distance from RP Group 5 [contra]","Average distance from PSL","Average distance from PSL Group 1 [ipsi]","Average distance from PSL Group 2 [ipsi]","Average distance from PSL Group 3 [ipsi]","Average distance from PSL Group 4 [ipsi]","Average distance from PSL Group 5 [ipsi]","Average distance from PSL Group 1 [contra]","Average distance from PSL Group 2 [contra]","Average distance from PSL Group 3 [contra]","Average distance from PSL Group 4 [contra]","Average distance from PSL Group 5 [contra]","Average Plaque count size small","Average Plaque count size medium","Average Plaque count size large","Average Plaque count size small [ipsi]","Average Plaque count size medium [ipsi]","Average Plaque count size large [ipsi]","Average Plaque count size small [contra]","Average Plaque count size medium [contra]","Average Plaque count size large [contra]","Average Plaque count size small [ipsi] Group 1 [RP]","Average Plaque count size small [ipsi] Group 2 [RP]","Average Plaque count size small [ipsi] Group 3 [RP]","Average Plaque count size small [ipsi] Group 4 [RP]","Average Plaque count size small [ipsi] Group 5 [RP]","Average Plaque count size medium [ipsi] Group 1 [RP]","Average Plaque count size medium [ipsi] Group 2 [RP]","Average Plaque count size medium [ipsi] Group 3 [RP]","Average Plaque count size medium [ipsi] Group 4 [RP]","Average Plaque count size medium [ipsi] Group 5 [RP]","Average Plaque count size large [ipsi] Group 1 [RP]","Average Plaque count size large [ipsi] Group 2 [RP]","Average Plaque count size large [ipsi] Group 3 [RP]","Average Plaque count size large [ipsi] Group 4 [RP]","Average Plaque count size large [ipsi] Group 5 [RP]","Average Plaque count size small [contra] Group 1 [RP]","Average Plaque count size small [contra] Group 2 [RP]","Average Plaque count size small [contra] Group 3 [RP]","Average Plaque count size small [contra] Group 4 [RP]","Average Plaque count size small [contra] Group 5 [RP]","Average Plaque count size medium [contra] Group 1 [RP]","Average Plaque count size medium [contra] Group 2 [RP]","Average Plaque count size medium [contra] Group 3 [RP]","Average Plaque count size medium [contra] Group 4 [RP]","Average Plaque count size medium [contra] Group 5 [RP]","Average Plaque count size large [contra] Group 1 [RP]","Average Plaque count size large [contra] Group 2 [RP]","Average Plaque count size large [contra] Group 3 [RP]","Average Plaque count size large [contra] Group 4 [RP]","Average Plaque count size large [contra] Group 5 [RP]","Average Plaque count size small [ipsi] Group 1 [PSL]","Average Plaque count size small [ipsi] Group 2 [PSL]","Average Plaque count size small [ipsi] Group 3 [PSL]","Average Plaque count size small [ipsi] Group 4 [PSL]","Average Plaque count size small [ipsi] Group 5 [PSL]","Average Plaque count size medium [ipsi] Group 1 [PSL]","Average Plaque count size medium [ipsi] Group 2 [PSL]","Average Plaque count size medium [ipsi] Group 3 [PSL]","Average Plaque count size medium [ipsi] Group 4 [PSL]","Average Plaque count size medium [ipsi] Group 5 [PSL]","Average Plaque count size large [ipsi] Group 1 [PSL]","Average Plaque count size large [ipsi] Group 2 [PSL]","Average Plaque count size large [ipsi] Group 3 [PSL]","Average Plaque count size large [ipsi] Group 4 [PSL]","Average Plaque count size large [ipsi] Group 5 [PSL]","Average Plaque count size small [contra] Group 1 [PSL]","Average Plaque count size small [contra] Group 2 [PSL]","Average Plaque count size small [contra] Group 3 [PSL]","Average Plaque count size small [contra] Group 4 [PSL]","Average Plaque count size small [contra] Group 5 [PSL]","Average Plaque count size medium [contra] Group 1 [PSL]","Average Plaque count size medium [contra] Group 2 [PSL]","Average Plaque count size medium [contra] Group 3 [PSL]","Average Plaque count size medium [contra] Group 4 [PSL]","Average Plaque count size medium [contra] Group 5 [PSL]","Average Plaque count size large [contra] Group 1 [PSL]","Average Plaque count size large [contra] Group 2 [PSL]","Average Plaque count size large [contra] Group 3 [PSL]","Average Plaque count size large [contra] Group 4 [PSL]","Average Plaque count size large [contra] Group 5 [PSL]","Average Area ROI","Average Plaque coverage [ipsi]","Average Plaque coverage [contra]","Average Plaque coverage [ipsi] Group 1 [RP]","Average Plaque coverage [ipsi] Group 2 [RP]","Average Plaque coverage [ipsi] Group 3 [RP]","Average Plaque coverage [ipsi] Group 4 [RP]","Average Plaque coverage [ipsi] Group 5 [RP]","Average Plaque coverage [contra] Group 1 [RP]","Average Plaque coverage [contra] Group 2 [RP]","Average Plaque coverage [contra] Group 3 [RP]","Average Plaque coverage [contra] Group 4 [RP]","Average Plaque coverage [contra] Group 5 [RP]","Average Plaque coverage [ipsi] Group 1 [PSL]","Average Plaque coverage [ipsi] Group 2 [PSL]","Average Plaque coverage [ipsi] Group 3 [PSL]","Average Plaque coverage [ipsi] Group 4 [PSL]","Average Plaque coverage [ipsi] Group 5 [PSL]","Average Plaque coverage [contra] Group 1 [PSL]","Average Plaque coverage [contra] Group 2 [PSL]","Average Plaque coverage [contra] Group 3 [PSL]","Average Plaque coverage [contra] Group 4 [PSL]","Average Plaque coverage [contra] Group 5 [PSL]"]

{"sheet":"Group Calculations","index":4,"n_rows":2,"n_cols":164,"rows_kept":2,"cut":false,"hidden":false,"merged":[]}
["Group name","Block count","Plaque count","Average plaque count","Plaque count [ipsi]","Average Plaque count [ipsi]","Plaque count [contra]","Average Plaque count [contra]","Plaque count [ipsi] Group 1 [RP]","Average Plaque count [ipsi] Group 1 [RP]","Plaque count [ipsi] Group 2 [RP]","Average Plaque count [ipsi] Group 2 [RP]","Plaque count [ipsi] Group 3 [RP]","Average Plaque count [ipsi] Group 3 [RP]","Plaque count [ipsi] Group 4 [RP]","Average Plaque count [ipsi] Group 4 [RP]","Plaque count [ipsi] Group 5 [RP]","Average Plaque count [ipsi] Group 5 [RP]","Plaque count [contra] Group 1 [RP]","Average Plaque count [contra] Group 1 [RP]","Plaque count [contra] Group 2 [RP]","Average Plaque count [contra] Group 2 [RP]","Plaque count [contra] Group 3 [RP]","Average Plaque count [contra] Group 3 [RP]","Plaque count [contra] Group 4 [RP]","Average Plaque count [contra] Group 4 [RP]","Plaque count [contra] Group 5 [RP]","Average Plaque count [contra] Group 5 [RP]","Plaque count [ipsi] Group 1 [PSL]","Average Plaque count [ipsi] Group 1 [PSL]","Plaque count [ipsi] Group 2 [PSL]","Average Plaque count [ipsi] Group 2 [PSL]","Plaque count [ipsi] Group 3 [PSL]","Average Plaque count [ipsi] Group 3 [PSL]","Plaque count [ipsi] Group 4 [PSL]","Average Plaque count [ipsi] Group 4 [PSL]","Plaque count [ipsi] Group 5 [PSL]","Average Plaque count [ipsi] Group 5 [PSL]","Plaque count [contra] Group 1 [PSL]","Average Plaque count [contra] Group 1 [PSL]","Plaque count [contra] Group 2 [PSL]","Average Plaque count [contra] Group 2 [PSL]","Plaque count [contra] Group 3 [PSL]","Average Plaque count [contra] Group 3 [PSL]","Plaque count [contra] Group 4 [PSL]","Average Plaque count [contra] Group 4 [PSL]","Plaque count [contra] Group 5 [PSL]","Average Plaque count [contra] Group 5 [PSL]","Sum Plaque size","Average Plaque size","Average Plaque size [ipsi]","Average Plaque size [contra]","Average Plaque size [ipsi] Group 1 [RP]","Average Plaque size [ipsi] Group 2 [RP]","Average Plaque size [ipsi] Group 3 [RP]","Average Plaque size [ipsi] Group 4 [RP]","Average Plaque size [ipsi] Group 5 [RP]","Average Plaque size [contra] Group 1 [RP]","Average Plaque size [contra] Group 2 [RP]","Average Plaque size [contra] Group 3 [RP]","Average Plaque size [contra] Group 4 [RP]","Average Plaque size [contra] Group 5 [RP]","Average Plaque size [ipsi] Group 1 [PSL]","Average Plaque size [ipsi] Group 2 [PSL]","Average Plaque size [ipsi] Group 3 [PSL]","Average Plaque size [ipsi] Group 4 [PSL]","Average Plaque size [ipsi] Group 5 [PSL]","Average Plaque size [contra] Group 1 [PSL]","Average Plaque size [contra] Group 2 [PSL]","Average Plaque size [contra] Group 3 [PSL]","Average Plaque size [contra] Group 4 [PSL]","Average Plaque size [contra] Group 5 [PSL]","Average Plaque count size small","Average Plaque count size medium","Average Plaque count size large","Average Plaque count size small [ipsi]","Average Plaque count size medium [ipsi]","Average Plaque count size large [ipsi]","Average Plaque count size small [contra]","Average Plaque count size medium [contra]","Average Plaque count size large [contra]","Average Plaque count size small [ipsi] Group 1 [RP]","Average Plaque count size small [ipsi] Group 2 [RP]","Average Plaque count size small [ipsi] Group 3 [RP]","Average Plaque count size small [ipsi] Group 4 [RP]","Average Plaque count size small [ipsi] Group 5 [RP]","Average Plaque count size medium [ipsi] Group 1 [RP]","Average Plaque count size medium [ipsi] Group 2 [RP]","Average Plaque count size medium [ipsi] Group 3 [RP]","Average Plaque count size medium [ipsi] Group 4 [RP]","Average Plaque count size medium [ipsi] Group 5 [RP]","Average Plaque count size large [ipsi] Group 1 [RP]","Average Plaque count size large [ipsi] Group 2 [RP]","Average Plaque count size large [ipsi] Group 3 [RP]","Average Plaque count size large [ipsi] Group 4 [RP]","Average Plaque count size large [ipsi] Group 5 [RP]","Average Plaque count size small [contra] Group 1 [RP]","Average Plaque count size small [contra] Group 2 [RP]","Average Plaque count size small [contra] Group 3 [RP]","Average Plaque count size small [contra] Group 4 [RP]","Average Plaque count size small [contra] Group 5 [RP]","Average Plaque count size medium [contra] Group 1 [RP]","Average Plaque count size medium [contra] Group 2 [RP]","Average Plaque count size medium [contra] Group 3 [RP]","Average Plaque count size medium [contra] Group 4 [RP]","Average Plaque count size medium [contra] Group 5 [RP]","Average Plaque count size large [contra] Group 1 [RP]","Average Plaque count size large [contra] Group 2 [RP]","Average Plaque count size large [contra] Group 3 [RP]","Average Plaque count size large [contra] Group 4 [RP]","Average Plaque count size large [contra] Group 5 [RP]","Average Plaque count size small [ipsi] Group 1 [PSL]","Average Plaque count size small [ipsi] Group 2 [PSL]","Average Plaque count size small [ipsi] Group 3 [PSL]","Average Plaque count size small [ipsi] Group 4 [PSL]","Average Plaque count size small [ipsi] Group 5 [PSL]","Average Plaque count size medium [ipsi] Group 1 [PSL]","Average Plaque count size medium [ipsi] Group 2 [PSL]","Average Plaque count size medium [ipsi] Group 3 [PSL]","Average Plaque count size medium [ipsi] Group 4 [PSL]","Average Plaque count size medium [ipsi] Group 5 [PSL]","Average Plaque count size large [ipsi] Group 1 [PSL]","Average Plaque count size large [ipsi] Group 2 [PSL]","Average Plaque count size large [ipsi] Group 3 [PSL]","Average Plaque count size large [ipsi] Group 4 [PSL]","Average Plaque count size large [ipsi] Group 5 [PSL]","Average Plaque count size small [contra] Group 1 [PSL]","Average Plaque count size small [contra] Group 2 [PSL]","Average Plaque count size small [contra] Group 3 [PSL]","Average Plaque count size small [contra] Group 4 [PSL]","Average Plaque count size small [contra] Group 5 [PSL]","Average Plaque count size medium [contra] Group 1 [PSL]","Average Plaque count size medium [contra] Group 2 [PSL]","Average Plaque count size medium [contra] Group 3 [PSL]","Average Plaque count size medium [contra] Group 4 [PSL]","Average Plaque count size medium [contra] Group 5 [PSL]","Average Plaque count size large [contra] Group 1 [PSL]","Average Plaque count size large [contra] Group 2 [PSL]","Average Plaque count size large [contra] Group 3 [PSL]","Average Plaque count size large [contra] Group 4 [PSL]","Average Plaque count size large [contra] Group 5 [PSL]","Average Area ROI","Average Plaque coverage [ipsi]","Average Plaque coverage [contra]","Average Plaque coverage [ipsi] Group 1 [RP]","Average Plaque coverage [ipsi] Group 2 [RP]","Average Plaque coverage [ipsi] Group 3 [RP]","Average Plaque coverage [ipsi] Group 4 [RP]","Average Plaque coverage [ipsi] Group 5 [RP]","Average Plaque coverage [contra] Group 1 [RP]","Average Plaque coverage [contra] Group 2 [RP]","Average Plaque coverage [contra] Group 3 [RP]","Average Plaque coverage [contra] Group 4 [RP]","Average Plaque coverage [contra] Group 5 [RP]","Average Plaque coverage [ipsi] Group 1 [PSL]","Average Plaque coverage [ipsi] Group 2 [PSL]","Average Plaque coverage [ipsi] Group 3 [PSL]","Average Plaque coverage [ipsi] Group 4 [PSL]","Average Plaque coverage [ipsi] Group 5 [PSL]","Average Plaque coverage [contra] Group 1 [PSL]","Average Plaque coverage [contra] Group 2 [PSL]","Average Plaque coverage [contra] Group 3 [PSL]","Average Plaque coverage [contra] Group 4 [PSL]","Average Plaque coverage [contra] Group 5 [PSL]"]
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'[PSL']])/GroupCalculations[[#This Row],[Block count]],0)","v":0},{"$f":"IFERROR(SUMIF(BlockIDs[Group],GroupCalculations[[#This Row],[Group name]],BlockIDs[Average Plaque coverage '[contra'] Group 5 '[PSL']])/GroupCalculations[[#This Row],[Block count]],0)","v":0}]

{"sheet":"Pivots1","index":5,"n_rows":3,"n_cols":11,"rows_kept":3,"cut":false,"hidden":true,"merged":[[0,9,0,10],[0,0,0,1],[0,3,0,4],[0,6,0,7]]}
["Block count per group",null,null,"Average plaque count",null,null,"Average plaque size",null,null,"Average area ROI"]
[]
["Row Labels","Block count",null,"Row Labels","Average plaque count",null,"Row Labels","Average plaque size",null,"Row Labels","Average area ROI"]

{"sheet":"Pivots2","index":6,"n_rows":219,"n_cols":2,"rows_kept":219,"cut":false,"hidden":true,"merged":[[183,0,184,2],[190,0,191,2],[205,0,206,2],[0,0,1,2],[37,0,38,2],[74,0,75,2],[168,0,169,2],[93,0,94,2],[108,0,109,2],[123,0,124,2],[138,0,139,2],[153,0,154,2],[7,0,8,2],[22,0,23,2],[44,0,45,2],[59,0,60,2],[82,0,83,2]]}
["Average plaque count per hemisphere"]
[]
[null,"Column Labels"]
["Values"]
["ipsi"]
["contra"]
[]
["Average plaque count (RP)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average plaque count (PSL)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average plaque size per hemisphere"]
[]
[null,"Column Labels"]
["Values"]
["ipsi"]
["contra"]
[]
["Average plaque size (RP)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average plaque size (PSL)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average plaque count S/M/L"]
[]
[null,"Column Labels"]
["Values"]
["small"]
["medium"]
["large"]
[]
["Average plaque count S/M/L per hemisphere"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \nsmall"]
["ipsi \nmedium"]
["ipsi \nlarge"]
["contra \nsmall"]
["contra \nmedium"]
["contra \nlarge"]
[]
["Average plaque count small (RP)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average plaque count medium (RP)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average plaque count large (RP)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average plaque count small (PSL)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average plaque count medium (PSL)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average plaque count large (PSL)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average absolute plaque coverage per hemisphere"]
[]
[null,"Column Labels"]
["Values"]
["ipsi"]
["contra"]
[]
["Average absolute plaque coverage (RP)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]
[]
["Average absolute plaque coverage (PSL)"]
[]
[null,"Column Labels"]
["Values"]
["ipsi \n1"]
["ipsi \n2"]
["ipsi \n3"]
["ipsi \n4"]
["ipsi \n5"]
["contra \n1"]
["contra \n2"]
["contra \n3"]
["contra \n4"]
["contra \n5"]

{"sheet":"Visualize Slide","index":7,"n_rows":4,"n_cols":24,"rows_kept":4,"cut":false,"hidden":false,"merged":[[0,15,0,19],[1,0,1,4],[2,0,2,4],[3,0,3,4],[0,0,0,2],[0,7,0,9],[0,11,0,13]]}
["Choose a slide to visualize:",null,null,null,{"$f":"INDEX(ImportAnimalIDs[SlideID],$D$1)","v":0},null,null,"Reference Point Injection",null,null,null,"Hemisphere Straight-Line",null,null,null,"Parallel straight-line"]
[{"$f":"\"Data shown for \" & $E$1","v":"Data shown for 0"},null,null,null,null,null,null,"RP","X [RPI]","Y [RPI]",null,null,"X [HSL]","Y [HSL]",null,null,"X [PSL] ipsi","Y [PSL] ipsi","X [PSL] contra","Y [PSL] contra",null,"slope:","y-intercept (I1)","y-intercept (I2)"]
[{"$f":"\"Distance to injection channel (PSL) \" & $E$1","v":"Distance to injection channel (PSL) 0"},null,null,null,null,null,null,"ipsi",{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),IF(INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),5)=INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),21),12,14))","v":{"$error":"#N/A"}},{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),IF(INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),5)=INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),21),13,15))","v":{"$error":"#N/A"}},null,"P1",{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),8)","v":{"$error":"#N/A"}},{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),9)","v":{"$error":"#N/A"}},null,"P1",{"$f":"I3","v":{"$error":"#N/A"}},{"$f":"J3","v":{"$error":"#N/A"}},{"$f":"I4","v":{"$error":"#N/A"}},{"$f":"J4","v":{"$error":"#N/A"}},null,{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),16)","v":{"$error":"#N/A"}},{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),IF(ImportAnimalIDs[Side'[I1']]=ImportAnimalIDs[Ipsilateral side],20,IF(ImportAnimalIDs[Side'[I2']]=ImportAnimalIDs[Ipsilateral side],24,\"Error\")))","v":{"$error":"#N/A"}},{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),IF(ImportAnimalIDs[Side'[I1']]=ImportAnimalIDs[Ipsilateral side],24,IF(ImportAnimalIDs[Side'[I2']]=ImportAnimalIDs[Ipsilateral side],20,\"Error\")))","v":{"$error":"#N/A"}}]
[{"$f":"\"Distance to injection point (RP) \" & $E$1","v":"Distance to injection point (RP) 0"},null,null,null,null,null,null,"contra",{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),IF(INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),5)=INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),21),14,12))","v":{"$error":"#N/A"}},{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),IF(INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),5)=INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),21),15,13))","v":{"$error":"#N/A"}},null,"P2",{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),10)","v":{"$error":"#N/A"}},{"$f":"INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),11)","v":{"$error":"#N/A"}},null,"P2",{"$f":"(R4-INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),IF(INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),5)=INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),21),20,24)))/INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),16)","v":{"$error":"#N/A"}},{"$f":"IF(N3<N4,N3,N4)","v":{"$error":"#N/A"}},{"$f":"(T4-INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),IF(INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),5)=INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),21),24,20)))/INDEX(ImportAnimalIDs[],MATCH(TRUE,EXACT($E$1,ImportAnimalIDs[SlideID]),0),16)","v":{"$error":"#N/A"}},{"$f":"IF(N3<N4,N3,N4)","v":{"$error":"#N/A"}}]

{"sheet":"Analyze Data","index":8,"n_rows":0,"n_cols":0,"rows_kept":0,"cut":false,"hidden":false,"merged":[]}

{"sheet":"Export Data","index":9,"n_rows":5,"n_cols":2,"rows_kept":5,"cut":false,"hidden":false,"merged":[[4,1,8,19],[2,1,2,19]]}
[]
[]
[null,"To export data to third-party applications (e.g. GraphPad Prism for statistical analysis), follow these steps for each parameter you are interested in."]
[]
[null,"1) Click one of the buttons below. This will show only relevant columns in the three worksheets “Slides”, “Block Calculations” and “Group Calculations”.\n2) Go to the respective worksheet that contains the data on slide, block or group level.\n3) You can further sort or filter the data as necessary, for example filter by group.\n4) Select the cells containing your data, copy and paste into third-party application. If needed, data can directly be copied as transposed data by using the respective button."]

{"sheet":"ForTransposedCopy","index":10,"n_rows":0,"n_cols":0,"rows_kept":0,"cut":false,"hidden":true,"merged":[]}

{"sheet":"Analyze Animal Table","index":11,"n_rows":1,"n_cols":19,"rows_kept":1,"cut":false,"hidden":true,"merged":[]}
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{"sheet":"RP Group 5","index":21,"n_rows":1,"n_cols":19,"rows_kept":1,"cut":false,"hidden":true,"merged":[]}
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