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Article type: Research Article
Authors: Lai, Chih | Rafa, Taras | Nelson, Dwight E.; 1
Affiliations: Department of Biology, Graduate Programs in Software Engineering, University of St. Thomas, St. Paul, MN, USA. Tel.: +1 651 962 5573; E-mail: clai@stthomas.edu, trafa@stthomas.edu, denelson@stthomas.edu
Note: [1] Dr. Nelson is now a Principal Scientist at Neuromodulation Research of Medtronic (E-mail: dwight.e.nelson@medtronic.com).
Abstract: Minimum spanning tree (MST) clustering sequentially inserts the nearest points in the ℜd space into a list which is then divided into clusters by using desired criteria. This insertion order, however, can be relaxed provided approximately nearby points in a condensed area are adjacently inserted into a list before distant points in other areas. Based on this observation, we propose an approximate clustering method in which a new Approximate MST (AMST) is repeatedly built in the maximum (d+1) iterations from two sources: a new Hilbert curve created from carefully shifted N data points, and a previous AMST which holds cumulative vicinity information derived from earlier iterations. Although the final AMST may not completely match to a true MST built from an O(N2) algorithm, most mismatches occur locally within individual data groups which are unimportant for clustering. Our experiments on synthetic datasets and animal motion vectors extracted from surveillance videos show that high-quality clusters can be efficiently obtained from this approximation method.
Keywords: Hilbert curve, minimum spanning tree, clustering, shared nearest neighbors
DOI: 10.3233/IDA-2009-0382
Journal: Intelligent Data Analysis, vol. 13, no. 4, pp. 575-597, 2009
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