Structural geography of the space of emerging patterns

Article type: Research Article

Authors: Li, Jinyan^{; *} | Wong, Limsoon

Affiliations: Institute for Infocomm Research, 21 Heng Mui Keng Terrace, Singapore 119613, Singapore. E-mail: jinyan@i2r.a-star.edu.sg, limsoon@i2r.a-star.edu.sg

Correspondence: [*] Corresponding author.

Abstract: Describing and capturing significant differences between two classes of data is an important data mining and classification research topic. In this paper, we use emerging patterns to describe these significant differences. Such a pattern occurs in one class of samples – its “home” class – with a high frequency but does not exist in the other class, so it can be considered as a characteristic property of its home class. We call the collection of all such patterns a space. Beyond the space, there are patterns that occur in both of the classes or that do not occur in any of the two classes. Within the space, the most general and most specific patterns bound the other patterns in a lossless convex way. We decompose the space into a terrace of pattern plateaus based on their frequency. We use the most general patterns to construct accurate classifiers. We also use these patterns in the bio-medical domain to suggest treatment plans for adjusting the expression levels of certain genes so that patients can be cured.

Keywords: Space of emerging patterns, convexity, structure decomposition, medical treatment plan, PCL classifier

DOI: 10.3233/IDA-2005-9605

Journal: Intelligent Data Analysis, vol. 9, no. 6, pp. 567-588, 2005