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Article type: Research Article
Authors: Fredriksson, Kimmo | Nikitin, Fedor
Affiliations: Department of Computer Science, University of Kuopio, P.O. Box 1627, 70211 Kuopio, Finland. kimmo.fredriksson@uku.fi | Saint-Petersburg State University, Faculty of Applied Mathematics and Control Processes, Universitetskii prospekt 35, Petergof, Saint-Petersburg, Russia 198504. fedor.nikitin@gmail.com
Note: [] Address for correspondence: Department of Computer Science, University of Kuopio, P.O. Box 1627, 70211 Kuopio, Finland
Abstract: Given a sequence S of n symbols over some alphabet Σ of size σ, we develop new compression methods that are (i) very simple to implement; (ii) provide O(1) time random access to any symbol (or short substring) of the original sequence. Our simplest solution uses at most 2h+o(h) bits of space, where h = n(H_{0}(S)+1), and H_{0}(S) is the zeroth-order empirical entropy of S. We discuss a number of improvements and trade-offs over the basic method. For example, we can achieve n(H_{k}(S)+1)+o(n(H_{k}(S)+1)) bits of space, for k = o(log_{σ}(n)). Several applications are discussed, including text compression, (compressed) full-text indexing and string matching.
Keywords: succinct data structures, text compression, string matching, full-text indexing
DOI: 10.3233/FI-2009-0066
Journal: Fundamenta Informaticae, vol. 92, no. 1-2, pp. 63-81, 2009
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