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Article type: Research Article
Authors: Mohelnikova-Duchonova, Beatrice; | Oliverius, Martin | Honsova, Eva | Soucek, Pavel
Affiliations: Department of Toxicogenomics, National Institute of Public Health, Prague, Czech Republic | First Faculty of Medicine, Charles University in Prague, Czech Republic | Department of Transplantation Surgery, Institute of Clinical and Experimental Medicine, Prague, Czech Republic | Department of Clinical and Transplantation Pathology, Institute of Clinical and Experimental Medicine, Prague, Czech Republic
Note: [] Address for correspondence: Pavel Soucek, PhD., Toxicogenomics Unit, National Institute of Public Health, Srobarova 48, Prague 10, 100 42 Czech Republic. Tel.: +420 267082711; Fax: +420 267311236; E-mail: psoucek@szu.cz
Abstract: Histologically verified pairs (n=10) of pancreatic tumors and non-neoplastic tissues were used for quantitative real-time PCR and the stability of 24 reference genes was analyzed with geNorm and NormFinder software. Raw C_{q} values correlated with the degree of RNA degradation. This correlation was abolished by normalization to C_{q} of 18S endogenous control gene. Both geNorm and NormFinder programs suggested EIF2B1, ELF1, MRPL19, and POP4 as the same most stable genes. We have thus identified suitable reference genes for future expression studies in pancreatic carcinoma. Normalization method reducing the effects of RNA degradation on the quality of results was also developed.
Keywords: Pancreas, carcinoma, transcript, quantification, reference gene, normalization
DOI: 10.3233/DMA-2011-0875
Journal: Disease Markers, vol. 32, no. 3, pp. 203-210, 2012
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